In Silico Study of Bioactive Compounds from Faloak Stem Bark (Sterculia quadrifida R. Br.) Against Estrogen Receptor Alpha as Potential Breast Anticancer Agents
DOI:
https://doi.org/10.59141/-.v8i2.556Keywords:
Breast Cancer, Estrogen Receptor Alpha, Faloak, Molecular DockingAbstract
Estrogen receptor alpha (ERα) is an important therapeutic target in hormone-dependent breast cancer, prompting the investigation of natural compounds with potential receptor-binding activity. This study aimed to evaluate the binding affinities and molecular interaction profiles of six bioactive compounds reported in Faloak (Sterculia quadrifida R. Br.) stem bark against ERα. Ligand structures were retrieved from PubChem, while the three-dimensional structure of ERα was obtained from the Protein Data Bank (PDB ID: 3ERT). Molecular docking was performed using PyRx version 0.8, and selected binding poses were analyzed using BIOVIA Discovery Studio Visualizer. The co-crystallized ligand, 4-hydroxytamoxifen, was used as the reference ligand. The docking scores of the tested compounds ranged from −7.1 to −8.6 kcal/mol, compared with −9.5 kcal/mol for 4-hydroxytamoxifen. Catechin-4-ol 3-O-α-L-rhamnopyranoside exhibited the most favorable docking score among the tested compounds and formed interactions with Glu353, Leu387, Met343, Leu525, Met421, Phe404, and Leu391. The observed hydrogen-bonding and hydrophobic interactions showed similarities to the interaction profile of the reference ligand, supporting the prioritization of this compound for further investigation. These findings identify catechin-4-ol 3-O-α-L-rhamnopyranoside as a promising computational candidate for further ERα-targeted research. However, molecular docking alone cannot establish receptor antagonistic activity or anticancer efficacy. Further molecular dynamics simulations and experimental studies are required to evaluate binding stability, biological activity, safety, and potential therapeutic relevance in breast cancer.
Downloads
References
Bray, F., Laversanne, M., Sung, H., Ferlay, J., Siegel, R. L., Soerjomataram, I., & Jemal, A. (2024). Global cancer statistics 2022: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries. CA: A Cancer Journal for Clinicians, 74(3), 229–263. https://doi.org/10.3322/caac.21834
Darojati, U. A., Murwanti, R., & Hertiani, T. (2022). Sterculia quadrifida R. Br.: A comprehensive review of ethnobotany, phytochemistry, pharmacology and toxicology. JPSCR: Journal of Pharmaceutical Science and Clinical Research, 7(1), 1. https://doi.org/10.20961/jpscr.v7i1.52244
Ethica, S. N. (2019). Pengantar bioinformatika untuk mahasiswa laboratorium medis. Deepublish.
Feng, Y., Spezia, M., Huang, S., Yuan, C., Zeng, Z., Zhang, L., Ji, X., Liu, W., Huang, B., Luo, W., Liu, B., Lei, Y., Du, S., Vuppalapati, A., Luu, H. H., Haydon, R. C., He, T. C., & Ren, G. (2018). Breast cancer development and progression: Risk factors, cancer stem cells, signaling pathways, genomics, and molecular pathogenesis. Genes & Diseases, 5(2), 77–106. https://doi.org/10.1016/j.gendis.2018.05.001
Hamid, N., Razak, R., & Najib, A. (2021). Virtual screening pada senyawa kimia tumbuhan terap (Artocarpus elasticus) terhadap reseptor alpha estrogen. Penerbit NEM.
Iktiarani, A., Damayanti, S. D., & Wulandari, D. N. (2024). Prediksi mekanisme antihipertensi senyawa fitokimia daun pepaya (Carica papaya) melalui inhibisi endothelin converting enzyme-1 dan calcium channel secara in silico. Jurnal Kedokteran Komunitas (Journal of Community Medicine), 12(1), 1–16. https://www.way2drug.com/
John, B. I. J. U., Sulaiman, C. T., George, S., & Reddy, V. R. K. (2014). Total phenolics and flavonoids in selected medicinal plants from Kerala. International Journal of Pharmacy and Pharmaceutical Sciences, 6(1), 406–408.
Matheus, R. (2019). Skenario pengelolaan sumber daya lahan kering: Menuju pertanian berkelanjutan. Deepublish.
Mutiah, R., Firdausy, A. F., Indrawijaya, Y. Y. A., & Hibbbatullah, H. (2021). In silico prediction of Heliannuol A, B, C, D, and E compounds on estrogen receptor β agonists. Indonesian Journal of Cancer Chemoprevention, 12(1), 37–45. https://doi.org/10.14499/indonesianjcanchemoprev12iss1pp37-45
Mutiah, R., Indrawijaya, Y. Y., & Puspita, D. (2020). Study in silico compounds in 96% ethanol extract of Chrysanthemum cinerariifolium (Trev.) leaves towards alfa estrogen receptors. Indonesian Journal of Cancer Chemoprevention, 11(3), 144–153. https://doi.org/10.14499/indonesianjcanchemoprev11iss3pp144-153
Naufa, F., Mutiah, R., Yen, Y., & Indrawijaya, A. (2022). Studi in silico potensi senyawa katekin teh hijau (Camellia sinensis) sebagai antivirus SARS-CoV-2 terhadap spike glycoprotein (6LZG) dan main protease (5R7Y). Journal of Food and Pharmaceutical Sciences, 10(1), 584–596.
Ojha, S., Raj, A., Roy, A., & Roy, S. (2018). Extraction of total phenolics, flavonoids and tannins from Paederia foetida L. leaves and their relation with antioxidant activity. Pharmacognosy Journal, 10(3), 541–547.
Purwani, S., Nahar, J., Zulfikar, Z., Nurlelasari, N., & Mayanti, T. (2021). Molecular docking on kokosanolide A and C for anticancer activity against human breast cancer cell MCF-7. Jurnal Kimia Valensi, 7(1), 52–57. https://doi.org/10.15408/jkv.v7i1.20534
Qi, C., Chang, J., Zhu, Y., Yeldandi, A. V., Rao, S. M., & Zhu, Y. J. (2002). Identification of protein arginine methyltransferase 2 as a coactivator for estrogen receptor α. Journal of Biological Chemistry, 277(32), 28624–28630. https://doi.org/10.1074/jbc.M201053200
Rahmadani, A. T. I., Lestari, W. Y., Kadir, N. A., Saputri, M., Erika, F., Usman, Salam, S. H. A. S., Herman, & Rijai, L. (2024). Sintesis, molecular docking dan aktivitas sitotoksik senyawa analog kalkon berbasis alfa tetralone terhadap sel kanker payudara MCF-7. Jurnal Sains dan Kesehatan, 3(1), 242–247.
Riwu, A. G., Nugraha, J., Purwanto, D. A., & Triyono, E. A. (2022). In silico analysis of anti-dengue activity of faloak (Sterculia quadrifida R. Br.) stem bark compounds. Journal of Pharmacy & Pharmacognosy Research. https://doi.org/10.56499/jppres22.1445_10.6.1006
Ruswanto, R., Nofianti, T., Lestari, T., Septian, A. D., Firmansyah, A. P., & Mardianingrum, R. (2024). Potential active compounds of propolis as breast anticancer candidates: In silico study. Jordan Journal of Biological Sciences, 17(1), 153–161. https://doi.org/10.54319/jjbs/170115
Saragih, G. S., & Siswadi, S. (2019). Antioxidant activity of plant parts extracts from Sterculia quadrifida R. Br. Asian Journal of Pharmaceutical and Clinical Research, 12(7), 143–148.
Sarmoko, Pratama, A. H., Choironi, N. A., & Fareza, M. S. (2023). Bioinformatic study of the active compound of morin in mulberry (Morus alba) as breast anticancer. AIP Conference Proceedings, 2972(1), 60–71. https://doi.org/10.1063/5.0184914
Shofi, M. (2021). Analisis senyawa α-spinasterol pada biji trembesi (Samanea saman (Jacq.) Merr.) terhadap penghambatan 3C-like protease SARS-CoV-2 melalui uji in silico. Jurnal Sintesis: Penelitian Sains, Terapan dan Analisisnya, 2(2), 74–88.
Siswadi, R. A., Pujiono, E., Saragih, G. S., & Rianawati, H. (2015). Utilization of faloak tree bark (Sterculia quadrifida R. Br.) as a raw material for herbal medicine on the Island of Timor. In Proceedings of a national seminar on biodiversity of Nusa Tenggara (pp. 43–55).
Siswadi, S., Pujiono, E., Rianawati, H., & Saragih, G. S. (2016). Nilai ekonomi kulit batang pohon faloak (Sterculia quadrifida R. Br.). In Proceeding of Mulawarman Pharmaceuticals Conferences (Vol. 3, pp. 379–388).
Tenda, P. E., Lenggu, M. Y., & Ngale, M. S. (2017). Antibacterial activity test of ethanol extract of faloak tree skin (Sterculia sp.) on Staphylococcus aureus bacteria. Health Info Journal, 15(1), 227–239.
Wulandari, R. P., Gabriel, K., Nurdin, H. A., Diffa, H. F. P., Sabiq, S. H., Natashya, P., Pribadi, A. P. A., & Aulifa, D. L. (2023). In silico study of secondary metabolite compounds in parsley (Petroselinum crispum) as a drug therapy for blood cancer (myeloproliferative neoplasm [MPN]) targeting JAK-2. Indonesian Journal of Chemical Science, 12(2), 216–228. http://journal.unnes.ac.id/sju/index.php/ijcs
Zhang, B., Li, H., Yu, K., & Jin, Z. (2022). Molecular docking-based computational platform for high-throughput virtual screening. CCF Transactions on High Performance Computing, 4(1), 63–74. https://doi.org/10.1007/s42514-021-00086-5
Downloads
Published
How to Cite
Issue
Section
License
Copyright (c) 2026 Maria Wihelmina, Putri Pandarangga , Agus Saputra

This work is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License.
Authors who publish with this journal agree to the following terms:
- Authors retain copyright and grant the journal right of first publication with the work simultaneously licensed under aCreative Commons Attribution-ShareAlike 4.0 International (CC-BY-SA). that allows others to share the work with an acknowledgement of the work's authorship and initial publication in this journal.
- Authors are able to enter into separate, additional contractual arrangements for the non-exclusive distribution of the journal's published version of the work (e.g., post it to an institutional repository or publish it in a book), with an acknowledgement of its initial publication in this journal.
- Authors are permitted and encouraged to post their work online (e.g., in institutional repositories or on their website) prior to and during the submission process, as it can lead to productive exchanges, as well as earlier and greater citation of published work.





